Tutorials and Interactive examples¶
We have developed Jupypter notebooks demonstrating how to use python-opentree interactively as part of a python workflow.
Example notebooks¶
To run these notebooks follow the installation instuctions in https://opentree.readthedocs.io/en/latest/readme.html#installation.
And start the notebook server by running:
jupyter notebook docs/notebooks/
For more information on Jupyter notebooks, see [https://jupyter.org/]
Workshop material¶
All the notes from a workshop presented in winter 2020 are in http://opentreeoflife.github.io/SSBworkshop/, git repo with code and data at https://github.com/snacktavish/OpenTree_SSB2020.
Getting a tree for a list of species names¶
https://github.com/snacktavish/OpenTree_SSB2020/blob/master/notebooks/DEMO_OpenTree.ipynb
Getting a tree for taxa found in GBIF¶
https://github.com/snacktavish/OpenTree_SSB2020/blob/master/notebooks/DEMO_GBIF_OpenTree.ipynb